I can't really see the point in embedding the original RAW file in the DNG
Easy file maintenance. One file contains all version. If the raw file is not NEF or CR2, you might want to embed the original.
If you are going to retain the RAW file, I would think you might as well just keep the NEF and the DNG.
If not for the possible corruption of the DNG, I would just keep the DNG with no embedding. Much smaller size.
I know the standardised format argument, but couldn't you just retain the DNG converter to convert files if necessary in the future?
Your DNG converter may not run on your latest version of Windows or whatever OS. You have to find a version of photo editing software which support NEF and can run on your computer. Even so, you have to convert and re-archive everything.
There is one very good reason of using the DNG now. It contains the setting you have used to correct the photo and also generate a thumbnail version of the corrected photo. When you browse the photos in Adobe Bridge, you see the corrected photos. If you want to output, say a file to be used for website, you just open it and output a small jpg for web use. With just the NEF, you just have what was taken with the camera and you may want to go through the correction task again.